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Graduate Institute of Biomedical Sciences




Po-Jung Huang

AppointmentsAssistant Professor

LabApplied bioinformatics laboratory


School/NationTsing Hua University, Taiwan

Tel: 3729 or 3168

E-mail: pjhuang@mail.cgu.edu.tw

Research website:

研究室現有: 博士後研究員 



專任研究助理  1 



Research outline:

1.  The development of trans-omics analysis platform for cancer research

2. Pathogen bioinformatics

3. The development of visual analytics tools for biological data interpretation

4. Automatic analysis pipeline development and database integration



1. Huang, P.-J., Lee, C.-C., Tan, B.C.-M., Yeh, Y.-M., Huang, K.-Y., Gan, R.-C., Chen, T.-W., Lee, C.-Y., Yang, S.-T., Liao, C.-S., Liu, H., Tang, P. (2015, Feb) Vanno: A visualization-aided variant annotation tool . Human Mutation, 36 (2), pp. 167-174.(SCI, IF=5.34; R/C=25/167, GENETICS & HEREDITY)

2. Huang, P.-J., Lee, C.-C., Tan, B.C.-M., Yeh, Y.-M., Chu, L.J., Chen, T.W., Chang, K.-P., Lee, C.-Y., Gan, R.-C., Liu, H., Tang, P. (2015, Jan). CMPD: Cancer mutant proteome database. Nucleic Acids Research, 43 (D1), pp. D849-D855.(SCI, IF=9.112; R/C=20/290, BIOCHEMISTRY & MOLECULAR BIOLOGY)

3. Chen SJ#, Liu H#, Liao CT#, Huang PJ, Huang Y, Hsu A, Tang P, Chang YS, Chen HC, Yen Tc (2015, Apr). Ultra-deep targeted sequencing of advanced oral squamous cell carcinoma identifies a mutation-based prognostic gene signature. Oncotarget , 6(20):18066-18080.(SCI, IF=6.359; R/C=21/211, ONCOLOGY)

4. Chen WH, Huang KY, Huang PJ, Hsu JH, Fang YK, Chiu CH, Tang P* (2015, Jul). Nitric oxide maintains cell survival of Trichomonas vaginalis upon iron depletion. Parasites & Vectors, 8:393. (SCI, IF=3.43; R/C=7/36, PARASITOLOGY)

5. Huang KY, Ku FM, Cheng WH, Lee CC, Huang PJ, Chu LCJ, Cheng CC, Fang YK, Wu HH, Tang P* (2015, Nov). Novel insights into the molecular events linking to cell death induced by tetracycline in the amitochondriate protozoan Trichomonas vaginalis. . Antimicrob. Agents Chemother, 59:11 6891-6903. (SCI, IF=4.476; R/C=19/119, MICROBIOLOGY)

6. Chen TW, Gan RC, Chang YF, Liao WC, Wu TH, Lee CC, Huang PJ, Lee CY, Chen YYM, Chiu CH, Tang P (2015, Aug). Is the whole greater than the sum of its parts? De novo assembly strategiesfor bacterial genomes based on paired-end sequencing. BMC Genomics , 16:648.(SCI, IF=3.986; R/C=40/167, GENETICS & HEREDITY)

7. Fang YK, Huang KY, Huang PJ, Lin R, Chao M, Tang P (2014, Oct). Gene expression analysis of cold-stress response in the sexually transmitted protist Trichomonas vaginalis. Journal of Microbiology, Immunology and Infection, S1684-1182(14)00175-3.(SCI, IF=2.349; R/C=69/119, MICROBIOLOGY)

8. Chen, T.-W., Li, H.-P., Lee, C.-C., Gan, R.-C., Huang, P.-J., Wu, T.H., Lee, C.-Y., Chang, Y.-F., Tang, P. (2014, Jun). ChIPseek, a web-based analysis tool for ChIP data. BMC Genomics, 15 (1), 539. (SCI, IF=3.986; R/C=40/167, GENETICS & HEREDITY)

9. Huang, P.-J., Yeh, Y.-M., Gan, R.-C., Lee, C.-C., Chen, T.-W., Lee, C.-Y., Liu, H., Chen, S.-J., Tang, P. (2013, Oct). CPAP: Cancer panel analysis pipeline. Human Mutation, 34 (10), pp. 1340-1346. (SCI, IF=5.34; R/C=25/167, GENETICS & HEREDITY).

10. Hackenberg, M., Huang, P.-J., Huang, C.-Y., Shi, B.-J., Gustafson, P., Langridge, P. (2013, Apr). A Comprehensive expression profile of micrornas and other classes of non-coding small RNAs inbarley under phosphorous-deficient and- sufficient conditions. DNA Research, 20 (2), pp. 109-125. (SCI, IF=5.477; R/C=23/167, GENETICS & HEREDITY).

11. Huang, K.-Y., Shin, J.-W., Huang, P.-J., Ku, F.-M., Lin, W.-C., Lin, R., Hsu, W.- M., Tang, P. (2013, Jan). Functional profiling of the Tritrichomonas foetus transcriptome and proteome. Molecular and Biochemical Parasitology, 187 (1), pp. 60-71. (SCI, IF=1.787; R/C=17/36, PARASITOLOGY)

12. Huang KY, Huang PJ, Ku FM, Lin R, Alderete JF, Tang P. (2012, Nov). Comparative transcriptomic and proteomic analyses of Trichomonas vaginalis following adherence to fibronectin. Infection and Immunity, 80 (11), pp. 3900- 3911. (SCI, IF=3.731; R/C=23/78, INFECTIOUS DISEASES).

13. Chen, T.W., Gan, R.C., Wu, T.H., Huang, P.J., Lee, C.Y., Chen, Y.Y., Chen, C.C., Tang, P. (2012,Jun). FastAnnotator--an efficient transcript annotation web tool.. BMC Genomics, 13 Suppl 7, S9.(SCI,IF=3.986; R/C=40/167, GENETICS & HEREDITY)

14. Huang PJ, Lin WC, Chen SC, Lin YH, Sun CH, Lyu PC, Tang P. (2012, Feb). Identification ofputative miRNAs from the deep-branching unicellular flagellates. Genomics, 99 (2), pp. 101-107. (SCI, IF=2.284; R/C=77/163, BIOTECHNOLOGY & APPLIED


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